Ever spot a chipmunk darting around your yard and wonder if these little guys carry diseases like mice? Honestly, yes—chipmunks can carry some diseases, but they don’t spread illness as easily as mice do.
Most of the risk actually comes from the parasites—like ticks or fleas—that live on chipmunks, not so much the chipmunks themselves.

Chipmunks can carry diseases like plague, Lyme disease, and hantavirus, but insects that bite both chipmunks and humans usually spread these illnesses. So, direct contact with chipmunks isn’t as risky as dealing with the bugs they bring along.
Still, it’s best to stay cautious around wild rodents if you want to protect yourself and your family.
You might not realize chipmunks can also have fungal infections or carry parasites, which adds another layer of concern. Knowing what diseases chipmunks carry helps you make smart choices and enjoy nature safely.
For more details, here’s a handy guide on chipmunks and disease risks.
Chipmunks Versus Mice: Disease Risks and Transmission

Both chipmunks and mice can carry germs that make people sick. It’s important to know how each rodent spreads illness, which diseases they carry, and how serious those diseases might get.
How Chipmunks and Mice Spread Diseases
Chipmunks and mice mostly spread diseases through their droppings, urine, and saliva. When these wastes dry out, little particles can float in the air.
If you breathe in that dust, you might get sick.
Touching droppings and then touching your mouth, eyes, or nose can also spread disease. Bites or scratches from chipmunks or mice pass on germs, too.
Both animals often have parasites like ticks or fleas, which bite people and spread more diseases. You should stay careful while cleaning up areas with signs of chipmunks or mice.
Key Diseases Carried by Chipmunks
Chipmunks carry illnesses such as hantavirus, leptospirosis, and Lyme disease. Breathing infected dust from their droppings or urine can give you hantavirus, which is a serious illness.
Ticks that feed on chipmunks can spread Lyme disease. Leptospirosis spreads through urine and can hurt your liver or kidneys.
Tularemia and salmonella are other dangers, causing flu-like symptoms. Try to avoid direct contact and clean up safely if chipmunks are around.
Comparison of Symptoms and Severity
Diseases from chipmunks and mice can be mild or severe. Some just cause fever, headaches, or muscle aches.
Hantavirus can lead to lung problems, while salmonella causes stomach issues. Tick-borne illnesses might stick around if you don’t treat them.
If a rodent bites you, take it seriously—these wounds can get infected. The best move is to avoid contact and keep your home clean to cut down on risk.
Notable Diseases Linked to Chipmunks

Chipmunks can carry several diseases that affect people, mostly through bites or contact with ticks and fleas. Some illnesses spread because of bacteria from insects on chipmunks.
Others come from viruses or bacteria in their urine or saliva. Knowing these risks helps you stay safe when you’re near chipmunks.
Lyme Disease and Tick Bites
Chipmunks often have ticks that can give you Lyme disease. This happens when a tick bites an infected chipmunk and then bites you.
Lyme disease can cause fever, headaches, muscle aches, fatigue, and that classic “bull’s-eye” rash. If you don’t treat it, Lyme can lead to joint pain and neurological problems.
You can avoid tick bites by checking your skin after being outside and using bug spray. Wearing long sleeves and pants helps too.
Plague, Tularemia, and Flea-Borne Illnesses
Chipmunks sometimes carry fleas infected with bacteria that cause diseases like plague and tularemia. Plague, though rare now, spreads when infected fleas bite you after feeding on a chipmunk.
It can cause swollen lymph nodes, fever, and serious illness. Tularemia, caused by Francisella tularensis, gets into your body through flea bites, direct contact, or breathing in contaminated dust.
It usually brings fever, skin ulcers, and swollen lymph nodes. Both diseases need quick medical treatment to avoid bad complications.
Hantavirus and Other Rodent-Borne Threats
You can get hantavirus by coming into contact with chipmunk urine, droppings, or saliva. This virus sometimes leads to a lung disease called hantavirus pulmonary syndrome, which causes fever, muscle aches, and trouble breathing.
It’s rare, but it’s definitely serious. Leptospirosis is another risk, spreading through water or soil contaminated by chipmunk urine.
It can cause fever, headaches, muscle pain, and sometimes kidney or liver damage. Always keep your distance from chipmunk nests and droppings to lower your risk.
Rabies and Rare Diseases
Rabies in chipmunks? It almost never happens, but there’s still a slim chance. This disease attacks the nervous system, leading to things like seizures, confusion, or even paralysis.
If a chipmunk—or any wild animal—bites you and seems off, don’t wait around. Go get medical help immediately.
Chipmunks can also carry some rare diseases. Sometimes, bacteria from them cause skin rashes or other weird symptoms.
It’s smart to avoid touching chipmunks, especially if they look sick or act odd. If you have to handle any wild rodent, throw on some gloves and wash your hands after. That’ll cut down your risk of catching something.